Distance from surface specified: 1.80 There are 28 ligand heavy atoms Ligand center of coords (x y z): 13.6993571428571 23.679 46.7412857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 16881 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 12548 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 12257 Number of spheres polar: 5889, nonpolar: 5484, out of current total: 12257 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.29540 27.68800 9.67980 37.67680 32.74180 60.73700 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1727 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 765 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 615 Spheres center of coords (x y z): 13.3643359349594 21.3245082926829 41.2751564227643 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.6678373207314 Final number of output spheres is: 200 Number of polar spheres: 114 Number of nonpolar spheres: 82 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 28