There are 28 ligand heavy atoms Ligand center of coords (x y z): 13.6993571428571 23.679 46.7412857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 16881 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9029 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9029 Number of spheres polar: 4268, nonpolar: 4132, out of current total: 9029 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.70160 25.69880 11.68500 35.67700 34.74440 58.73300 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1026 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 479 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 170 Spheres center of coords (x y z): 12.6014529411765 26.8083552941176 43.9843647058824 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.5798096850525 Final number of output spheres is: 120 Number of polar spheres: 37 Number of nonpolar spheres: 73 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 28