usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): 15.9050476190476 -13.3798333333333 20.4540238095238 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1524 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 817 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 815 Number of spheres polar: 301, nonpolar: 345, out of current total: 815 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.08889 25.85867 -23.35361 -4.35542 10.47458 30.43051 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 436 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 380 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 357 Spheres center of coords (x y z): 16.0409484313725 -14.7352597759104 20.2479823809524 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.10123909198045 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 42