usefragsph not on
There are 30 ligand heavy atoms
Ligand center of coords (x y z): 5.21093333333333 17.2211 18.4335666666667
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 981
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 582
WARNING: removing a crystallographic sphere that is distance 0.90845473194871 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 581
Number of spheres polar: 281, nonpolar: 205, out of current total: 581
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.78491 15.19122 7.27254 27.02415 8.48222 28.40231
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 335
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 279
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 261
Spheres center of coords (x y z): 5.04043318007663 15.1584482375479 18.9260292337165
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.7958925840035
Final number of output spheres is: 60
Number of polar spheres: 34
Number of nonpolar spheres: 21
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 29