usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 16.91525 -14.6577916666667 22.9937083333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1237 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 740 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 735 Number of spheres polar: 265, nonpolar: 263, out of current total: 735 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.92762 26.76701 -24.28930 -4.75152 13.02266 32.86506 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 418 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 362 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 335 Spheres center of coords (x y z): 17.274452358209 -16.1239569552239 22.3630493731343 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.85425915752232 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 24