usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 13.0268 -11.3370666666667 20.6588666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 927 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 652 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 652 Number of spheres polar: 246, nonpolar: 269, out of current total: 652 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.08047 22.99190 -21.17740 -4.66278 10.69719 30.57959 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 228 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 186 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 162 Spheres center of coords (x y z): 15.9283016049383 -14.3267140740741 18.8809750617284 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.87579146836554 Final number of output spheres is: 45 Number of polar spheres: 32 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 15