usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): 16.8251666666667 -14.2205952380952 21.7011904761905 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1401 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 790 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 787 Number of spheres polar: 242, nonpolar: 326, out of current total: 787 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.83260 26.73838 -24.05245 -4.69283 11.70306 31.68243 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 481 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 429 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 364 Spheres center of coords (x y z): 16.8149773076923 -15.304340934066 20.1598028021978 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.04110640964352 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 42