usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 16.058575 -13.91555 20.5663
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1274
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 749
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 749
Number of spheres polar: 266, nonpolar: 307, out of current total: 749
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.24086 26.00659 -23.78921 -4.20600 10.67731 30.55749
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 258
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 221
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 201
Spheres center of coords (x y z): 16.6145020895522 -15.0334506965174 19.5877328855721
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.55185547386865
Final number of output spheres is: 45
Number of polar spheres: 19
Number of nonpolar spheres: 19
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 40