usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 16.78709375 -14.02659375 22.84759375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1353 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 812 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 808 Number of spheres polar: 296, nonpolar: 294, out of current total: 808 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.18492 26.33258 -23.93322 -4.48175 12.88568 32.64796 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 442 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 388 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 374 Spheres center of coords (x y z): 16.731159973262 -16.3023353475936 22.2747013101604 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64708167935174 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 32