usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 16.4956571428571 -14.0382 22.7720857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1353 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 837 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 833 Number of spheres polar: 347, nonpolar: 261, out of current total: 833 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.50944 26.46319 -23.66884 -4.03926 12.83675 32.45399 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 285 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 242 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 233 Spheres center of coords (x y z): 16.5083217167382 -16.5026732618026 22.8140015879828 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.52616294633084 Final number of output spheres is: 45 Number of polar spheres: 22 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 35