usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 57.5740810810811 20.2941351351351 22.2368108108108 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1563 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1024 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1024 Number of spheres polar: 308, nonpolar: 382, out of current total: 1024 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 47.59200 67.55841 10.29571 29.77448 13.26346 32.18890 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 376 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 289 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 275 Spheres center of coords (x y z): 58.7363901090909 20.2112538545455 24.9801092727273 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.7739528942921 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 37