usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 14.3600454545455 -12.5891818181818 19.5552727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 960 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 734 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 733 Number of spheres polar: 202, nonpolar: 312, out of current total: 733 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.62997 24.35135 -22.39592 -5.05765 9.58324 29.42981 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 376 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 329 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 306 Spheres center of coords (x y z): 15.3027578431372 -15.1101307843137 17.9326283333333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.79516718856475 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 22