usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 14.94768 -12.84448 18.88212 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 805 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 605 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 605 Number of spheres polar: 165, nonpolar: 253, out of current total: 605 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.23841 24.88759 -22.51444 -5.14587 8.98985 28.87290 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 248 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 201 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 193 Spheres center of coords (x y z): 15.8339647150259 -15.5152441450777 17.8793138341969 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.18550504456426 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 25