usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 15.013037037037 -12.8472592592593 18.8063703703704 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1107 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 765 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 765 Number of spheres polar: 219, nonpolar: 318, out of current total: 765 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.12730 24.95925 -22.69713 -4.95948 8.88163 28.79729 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 280 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 222 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 214 Spheres center of coords (x y z): 15.70956 -15.2437879906542 17.6632971028037 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.07528562790295 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 27