usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 17.1912777777778 -14.2933055555556 23.4216666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1076 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 595 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 595 Number of spheres polar: 224, nonpolar: 251, out of current total: 595 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.23408 27.05572 -24.25905 -4.31119 13.46474 33.39033 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 221 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 184 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 163 Spheres center of coords (x y z): 16.9450233742331 -15.8074771165644 22.7603019018405 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.10055787002184 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 36