usefragsph not on There are 39 ligand heavy atoms Ligand center of coords (x y z): 16.941641025641 -14.4525641025641 23.0814871794872 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 942 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 544 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 525 Number of spheres polar: 206, nonpolar: 186, out of current total: 525 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.17488 26.37449 -24.33866 -4.48779 13.10104 33.00014 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 299 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 262 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 247 Spheres center of coords (x y z): 16.0513489878542 -15.8393879757085 23.4858000404858 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.79328486848965 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 39