usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): -19.2740789473684 -34.2670789473684 20.3122105263158 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1461 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 923 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 922 Number of spheres polar: 310, nonpolar: 376, out of current total: 922 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -29.25069 -9.29825 -44.21365 -24.27042 10.31646 30.29113 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 312 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 250 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 234 Spheres center of coords (x y z): -19.4835973504273 -35.5267881623931 20.2922603418803 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.17936905306099 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 38