usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -19.3634444444444 -33.4385555555556 22.4273333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1327 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 840 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 840 Number of spheres polar: 297, nonpolar: 330, out of current total: 840 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -29.34959 -9.42537 -43.30512 -23.94108 12.45059 32.42514 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 280 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 212 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 171 Spheres center of coords (x y z): -18.5633589473684 -35.4144424561404 21.1390050292398 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.94083988191718 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 27