usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 17.1590303030303 -14.3477272727273 23.3704848484848 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1021 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 649 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 649 Number of spheres polar: 284, nonpolar: 239, out of current total: 649 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.29687 26.44352 -24.29764 -4.75259 13.42048 33.34158 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 331 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 284 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 262 Spheres center of coords (x y z): 16.5291822519084 -15.5375867175573 23.6267466412214 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.07239029379917 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 33