usefragsph not on There are 9 ligand heavy atoms Ligand center of coords (x y z): 32.5852222222222 18.8556666666667 24.5725555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 947 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 649 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 646 Number of spheres polar: 243, nonpolar: 234, out of current total: 646 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.60463 41.89827 8.93500 28.74500 14.57587 34.36829 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 222 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 179 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 138 Spheres center of coords (x y z): 29.9965635507246 14.176741884058 22.238852826087 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.60806343606633 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 9