usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 31.5008571428571 13.7410571428571 24.3593714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1451 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 874 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 870 Number of spheres polar: 331, nonpolar: 328, out of current total: 870 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.66442 41.48564 3.92211 23.73233 14.36247 34.32728 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 475 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 406 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 387 Spheres center of coords (x y z): 30.5043569767442 13.7182329198966 23.6559310594315 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.77564124681919 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 19 Final number of spheres that are from crystallographic ligand: 35