usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 32.2491081081081 13.4592702702703 24.9552432432432 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1454 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 855 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 850 Number of spheres polar: 269, nonpolar: 360, out of current total: 850 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.29662 42.05839 3.74814 23.38661 14.97926 34.88656 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 281 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 224 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 199 Spheres center of coords (x y z): 30.3810986934673 13.2941789949749 23.6532953768844 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.63785225007306 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 37