usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 32.4018 14.0725 24.6450666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1226 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 767 WARNING: removing a crystallographic sphere that is distance 1.1028821333216 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 764 Number of spheres polar: 292, nonpolar: 310, out of current total: 764 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 22.74457 42.38842 4.30034 24.02153 14.64792 34.63334 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 394 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 330 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 277 Spheres center of coords (x y z): 30.6304436462094 12.9913698194946 24.3898698194946 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.14648715361091 Final number of output spheres is: 60 Number of polar spheres: 32 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 29