usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 9.21872727272727 -14.1939090909091 11.5021818181818 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 799 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 523 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 516 Number of spheres polar: 182, nonpolar: 187, out of current total: 516 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.63440 19.17143 -23.82052 -4.21083 1.50741 21.45003 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 292 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 259 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 240 Spheres center of coords (x y z): 10.1162082083333 -17.028195375 11.27151525 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.46086626571366 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 11