usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 16.8575714285714 -14.8460571428571 22.2268285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1377 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 811 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 802 Number of spheres polar: 282, nonpolar: 324, out of current total: 802 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.87612 26.81787 -24.14140 -4.86056 12.24262 32.18702 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 297 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 232 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 197 Spheres center of coords (x y z): 17.4162270558376 -15.597336751269 21.0510516243655 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.22571843118991 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 35