usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 16.79945 16.696125 21.134625
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1066
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 551
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 551
Number of spheres polar: 185, nonpolar: 226, out of current total: 551
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.80325 26.63243 7.24802 24.34026 11.15659 31.13226
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 332
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 289
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 269
Spheres center of coords (x y z): 16.3102196282528 15.3281720446097 20.6485265055762
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.73497234952271
Final number of output spheres is: 60
Number of polar spheres: 24
Number of nonpolar spheres: 25
Number of spheres that are near neither polar nor nonpolar receptor atoms: 11
Final number of spheres that are from crystallographic ligand: 40