usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 13.8054210526316 -12.5775789473684 20.3837368421053 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 874 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 656 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 655 Number of spheres polar: 237, nonpolar: 238, out of current total: 655 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.80957 23.67883 -22.53004 -4.95804 10.44139 30.36275 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 237 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 187 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 165 Spheres center of coords (x y z): 15.2232257575758 -15.2439118181818 18.6417987272727 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.45090649830446 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 19