usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 13.7344210526316 -12.5140526315789 20.2112631578947 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 879 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 635 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 632 Number of spheres polar: 224, nonpolar: 244, out of current total: 632 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.82794 23.46291 -22.27324 -4.71200 10.37747 30.14301 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 231 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 185 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 168 Spheres center of coords (x y z): 15.2731106547619 -15.4101326190476 18.7567335119048 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.66062980998128 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 19