usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 14.7741052631579 -12.5935263157895 20.9595263157895 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 968 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 642 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 640 Number of spheres polar: 298, nonpolar: 204, out of current total: 640 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.83877 24.66593 -22.56927 -4.93753 10.97065 30.95778 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 219 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 169 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 141 Spheres center of coords (x y z): 16.5653809219858 -15.2226346099291 20.3565031205674 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.07236374828405 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 19