usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 14.92248 -12.18032 18.91368 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1066 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 717 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 715 Number of spheres polar: 232, nonpolar: 288, out of current total: 715 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.11780 24.81513 -21.84000 -4.99522 8.92289 28.91175 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 407 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 348 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 335 Spheres center of coords (x y z): 15.3625456119403 -14.961892119403 17.5499052238806 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.24109402385605 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 25