usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 16.8229 -13.4119 22.4565 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 929 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 556 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 552 Number of spheres polar: 265, nonpolar: 211, out of current total: 552 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.82913 25.82155 -23.10071 -3.88443 12.46445 32.44743 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 200 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 148 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 106 Spheres center of coords (x y z): 17.6927746226415 -14.3839233962264 21.3914387735849 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.77969228995856 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 30