usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 28.7221666666667 45.7066333333333 27.8679 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1788 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 865 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 860 Number of spheres polar: 286, nonpolar: 368, out of current total: 860 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.81492 38.67115 35.73565 55.56225 17.89393 37.86369 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 287 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 227 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 192 Spheres center of coords (x y z): 28.4197372916667 47.4841869791667 25.4587433333333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.4936206839994 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 30