usefragsph not on
There are 30 ligand heavy atoms
Ligand center of coords (x y z): 28.7221666666667 45.7066333333333 27.8679
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1788
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 865
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 860
Number of spheres polar: 286, nonpolar: 368, out of current total: 860
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.81492 38.67115 35.73565 55.56225 17.89393 37.86369
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 468
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 399
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 341
Spheres center of coords (x y z): 28.3545427565982 47.2283390029326 25.4645918768328
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.32629778539929
Final number of output spheres is: 60
Number of polar spheres: 27
Number of nonpolar spheres: 22
Number of spheres that are near neither polar nor nonpolar receptor atoms: 11
Final number of spheres that are from crystallographic ligand: 30