usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 13.5135333333333 18.4370666666667 20.2216 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 919 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 612 WARNING: removing a crystallographic sphere that is distance 0.781929664356072 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 607 Number of spheres polar: 277, nonpolar: 181, out of current total: 607 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.70315 23.33714 8.47269 26.23841 10.24391 30.18136 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 306 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 270 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 197 Spheres center of coords (x y z): 15.6094536040609 15.0182295939086 20.2253948730964 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.1717183983471 Final number of output spheres is: 60 Number of polar spheres: 35 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 14