usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 14.0058235294118 18.4252941176471 19.3296470588235 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 981 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 616 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 613 Number of spheres polar: 243, nonpolar: 213, out of current total: 613 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.12317 23.99813 8.70575 26.71500 9.33877 29.27447 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 206 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 164 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 154 Spheres center of coords (x y z): 14.8829008441558 15.717218961039 17.9322103896104 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.13936438733543 Final number of output spheres is: 45 Number of polar spheres: 25 Number of nonpolar spheres: 11 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 17