usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 16.4042647058824 -13.9835882352941 23.5043823529412 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1351 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 767 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 764 Number of spheres polar: 300, nonpolar: 294, out of current total: 764 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.70418 26.26551 -23.93121 -4.08407 13.57573 33.38998 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 409 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 362 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 340 Spheres center of coords (x y z): 16.9579718235294 -15.8013059117647 23.4489188235294 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.8356180166746 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 34