usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 17.1543333333333 -13.6829333333333 23.3274666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 972 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 532 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 530 Number of spheres polar: 146, nonpolar: 272, out of current total: 530 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.19130 27.15072 -23.16475 -3.94528 13.36225 33.12813 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 199 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 167 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 154 Spheres center of coords (x y z): 17.3742932467532 -15.4844031818182 22.6955307142857 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.25632013886915 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 30