usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 17.0317096774194 -13.9070322580645 23.0930322580645 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1049 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 582 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 582 Number of spheres polar: 231, nonpolar: 236, out of current total: 582 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.19471 26.87731 -23.49052 -4.11877 13.09416 32.82680 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 220 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 177 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 169 Spheres center of coords (x y z): 16.4629446745562 -15.6505104733728 23.0879346745562 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.21589307167776 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 31