usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 16.95859375 -13.78375 23.25996875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 965 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 504 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 504 Number of spheres polar: 202, nonpolar: 214, out of current total: 504 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.96563 26.63680 -23.54998 -4.17487 13.28368 33.19409 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 279 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 243 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 222 Spheres center of coords (x y z): 16.422537027027 -14.8945532432432 23.044285045045 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.61731348827189 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 32