usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 17.7181764705882 55.9988235294118 44.3632058823529 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2058 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1176 WARNING: removing a crystallographic sphere that is distance 1.14577921084299 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.05214495199093 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1174 Number of spheres polar: 356, nonpolar: 450, out of current total: 1174 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.74561 27.62751 46.03843 65.95400 34.37152 54.30751 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 376 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 315 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 304 Spheres center of coords (x y z): 18.5681168092105 52.6231159868421 43.0777507236842 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.93055599133357 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 32