usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 16.3345757575758 19.9215757575758 22.8606666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1425 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 875 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 869 Number of spheres polar: 359, nonpolar: 336, out of current total: 869 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.41438 26.27512 10.11783 29.83151 12.90068 32.79535 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 457 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 392 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 335 Spheres center of coords (x y z): 16.7299623880597 18.1589699402985 21.5794606268657 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.96019183429092 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 33