usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 16.1880303030303 19.9744242424242 22.6711818181818 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1325 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 846 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 843 Number of spheres polar: 292, nonpolar: 333, out of current total: 843 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.28331 26.13637 10.02332 29.97076 12.68110 32.66433 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 477 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 410 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 392 Spheres center of coords (x y z): 16.0227135969388 18.0363602040816 21.9262078571429 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.61827136612545 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 33