usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 14.74608 -12.26984 18.7896 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1023 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 669 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 668 Number of spheres polar: 190, nonpolar: 268, out of current total: 668 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.70826 24.71566 -21.96884 -5.08604 8.79242 28.75225 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 382 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 326 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 310 Spheres center of coords (x y z): 15.0104053548387 -14.891254516129 17.4907047741935 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.18842945677623 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 25