usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 15.06225 -12.3599285714286 18.57325 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1110 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 773 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 771 Number of spheres polar: 217, nonpolar: 327, out of current total: 771 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.09994 25.05306 -22.31041 -4.68175 8.58735 28.57285 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 277 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 235 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 224 Spheres center of coords (x y z): 15.5138169196429 -15.3543025446429 17.0829298214286 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.42615029145463 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 28