usefragsph not on
There are 10 ligand heavy atoms
Ligand center of coords (x y z): 35.7716 38.8632 39.9936
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 924
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 676
WARNING: removing a crystallographic sphere that is distance 0.829923490449573 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 673
Number of spheres polar: 211, nonpolar: 288, out of current total: 673
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.96346 45.74629 29.01853 48.66218 30.08948 49.91401
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 379
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 338
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 316
Spheres center of coords (x y z): 38.3253410759494 38.1155468037975 38.8486916772152
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.65151588387621
Final number of output spheres is: 60
Number of polar spheres: 30
Number of nonpolar spheres: 23
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 9