usefragsph not on
There are 30 ligand heavy atoms
Ligand center of coords (x y z): 5.04293333333333 17.1375333333333 18.3798
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1038
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 581
WARNING: removing a crystallographic sphere that is distance 1.09951716676003 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 572
Number of spheres polar: 240, nonpolar: 177, out of current total: 572
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.87712 15.00985 7.19331 27.11346 8.48815 28.36634
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 327
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 281
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 244
Spheres center of coords (x y z): 5.6506768442623 14.8972666393443 17.5216495081967
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.18619872763127
Final number of output spheres is: 60
Number of polar spheres: 36
Number of nonpolar spheres: 19
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 29