Enabling DOCK Developer Scripts incl Database Preparation
Intel/Linux
inactives
we got past inactivesDB.ism
actives
we got past actives.ism
node-5-37.c.bkslab.org
du2 starts
1 molecule processed, 0 errors

convert.py (MDL SDF -> Isomeric SMILES):
	mols in: 1	mols out: 1

Total: 1 mols processed.
mol2nam v1.9  Structure to Name Conversion
OpenEye Scientific Software, February 2009

FATAL got_license: could not check out a license for mmlibs version 1.9
FATAL mmerr_initialize:  got_license() failed
FATAL got_license: could not check out a license for mmlibs version 1.9
FATAL mmerr_initialize:  got_license() failed
m2io_open failed for file C.mae.
sed: can't read G.ism: No such file or directory
E.mol2: No such file or directory.
Warning: Unable to open "ref/F2.mol2" for reading molecules.
Fatal: Cannot open: ref/F2.mol2
sed: can't read H.ism: No such file or directory
/bin/mv: cannot stat `ref/F2.mol2': No such file or directory
ref/F.mol2: No such file or directory.
ref/D.sdf: No such file or directory.
ref/D.sdf: No such file or directory.
FATAL mmmdl_new: could not open file ../new.sdf: No such file or directory.
mmmdl_new failed.
FATAL got_license: could not check out a license for mmlibs version 1.9
FATAL mmerr_initialize:  got_license() failed
FATAL got_license: could not check out a license for mmlibs version 1.9
FATAL mmerr_initialize:  got_license() failed
m2io_open failed for file C.mae.
sed: can't read G.ism: No such file or directory
E.mol2: No such file or directory.
FATAL mmmdl_new: could not open file ../new.sdf: No such file or directory.
mmmdl_new failed.
FATAL got_license: could not check out a license for mmlibs version 1.9
FATAL mmerr_initialize:  got_license() failed
FATAL got_license: could not check out a license for mmlibs version 1.9
FATAL mmerr_initialize:  got_license() failed
m2io_open failed for file C.mae.
sed: can't read G.ism: No such file or directory
E.mol2: No such file or directory.
FATAL mmmdl_new: could not open file ../new.sdf: No such file or directory.
mmmdl_new failed.
FATAL got_license: could not check out a license for mmlibs version 1.9
FATAL mmerr_initialize:  got_license() failed
FATAL got_license: could not check out a license for mmlibs version 1.9
FATAL mmerr_initialize:  got_license() failed
m2io_open failed for file C.mae.
sed: can't read G.ism: No such file or directory
E.mol2: No such file or directory.
F2.mol2: No such file or directory.
F2.mol2: No such file or directory.
F2.mol2: No such file or directory.
F2.mol2: No such file or directory.
first try already in
then inzinc
count is 0
nothing to compress
count is 0
nothing to compress
nothing to compress
nothing to compress
du2.csh script updated
we could not build the ligand for docking!