usefragsph not on There are 45 ligand heavy atoms Ligand center of coords (x y z): 16.4957777777778 -14.5787555555556 22.4653777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1399 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 815 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 789 Number of spheres polar: 263, nonpolar: 301, out of current total: 789 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.49855 26.39171 -24.23907 -4.66497 12.48440 32.46350 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 298 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 250 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 235 Spheres center of coords (x y z): 17.0772748085107 -15.6184952765958 22.0645677021277 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.25402848035851 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 45