usefragsph not on
There are 39 ligand heavy atoms
Ligand center of coords (x y z): 12.4340769230769 -14.7496923076923 13.268
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1344
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 793
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 784
Number of spheres polar: 238, nonpolar: 342, out of current total: 784
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.46022 22.41233 -23.62184 -4.77235 3.30198 23.19888
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 440
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 378
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 346
Spheres center of coords (x y z): 11.7039455202312 -15.427443150289 14.355928265896
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.46340406362127
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 24
Number of spheres that are near neither polar nor nonpolar receptor atoms: 21
Final number of spheres that are from crystallographic ligand: 39