usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 20.8992333333333 14.1329333333333 63.7738666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1181 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 798 WARNING: removing a crystallographic sphere that is distance 1.19023485077526 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 796 Number of spheres polar: 284, nonpolar: 362, out of current total: 796 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.59889 30.37377 4.24772 23.50594 53.83430 72.63478 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 253 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 199 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 166 Spheres center of coords (x y z): 20.8558269879518 13.0553209638554 61.2831830722891 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.94698627942828 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 29